This lesson contains the following sections
If you electronically send someone an important document (or documents), or an applet or application to run, the recipient needs a way to verify that the document or code came from you and was not modified in transit (for example, by a malicious user intercepting it). Digital signatures, certificates, and keystores all help ensure the security of the files you send.
keytool or security API methods.
That is, you generate a digital signature for the document or code, using
the jarsigner tool or Security API methods.
A recipient needs to ensure that your public key itself is authentic before he/she can use it to verify that your signature is authentic. Therefore, you will usually supply a certificate that contains your public key together with the key of a Certificate Authority who can vouch for your key's authenticity. See the next section for details.
For more information about the terminology and concepts of signing and verification, and further explanation of the benefits, see the Signing JAR Files section of the "The Packaging Programs in JAR Files" lesson.
If the recipient cannot establish a trust chain, then he/she can calculate the
the certificate fingerprint(s),
using the keytool 
-import or -printcert command.
A fingerprint is a relatively short number that uniquely and 
reliably identifies the certificate. (Technically, the fingerprint is a hash
value of the certificate information, using a message digest function.)
The recipient can then phone the
certificate owner and compare the fingerprint values of the 
received certificate with the certificate that was sent. 
If the fingerprints are the same, the certificates are the 
same.
Thus you can ensure that a certificate was not modified in transit. One other potential uncertainty when working with certificates is the identity of the sender. Sometimes a certificate is self-signed, that is, signed using the private key corresponding to the public key in the certificate; the issuer is the same as the subject. It is reasonable to self-sign a certificate if the recipient already trusts the sender.
Otherwise the sender needs to obtain a certificate from a trusted third party, referred to as a certification authority (CA). To do so, you send a self-signed certificate signing request (CSR) to the CA. The CA verifies the signature on the CSR and your identity, perhaps by checking your driver's license or other information. The CA then vouches for your being the owner of the public key by issuing a certificate and signing it with its own (the CA's) private key. Anybody who trusts the issuing CA's public key can now verify the signature on the certificate. In many cases the issuing CA itself may have a certificate from a CA higher up in the CA hierarchy, leading to certificate chains.
Certificates of entities you trust are typically imported into your keystore as "trusted certificates." The public key in each such certificate may then be used to verify signatures generated using the corresponding private key. Such verifications can be accomplished by:
jarsigner tool (if the document/code and signature
appear in a JAR file),
If you are sending signed code or documents to others, you need to
supply them with the certificate containing the public key corresponding
to the private key used to sign the code/document. 
The keytool -export command or API methods
can export your certificate from your keystore to a file, which can then be 
sent to anyone needing it. A person who receives the certificate can import
it into the keystore as a trusted certificate, using,
for example, API methods or the 
keytool -import command. 
If you use the jarsigner tool to generate a signature for a JAR file,
the tool retrieves your certificate and its supporting certificate chain from
your keystore. The tool then stores them, along with the signature, in the JAR
file.
Private keys and their associated public key certificates are stored in password-protected databases called keystores. A keystore can contain two types of entries: the trusted certificate entries discussed above, and key/certificate entries, each containing a private key and the corresponding public key certificate. Each entry in a keystore is identified by an alias.
A keystore owner can have multiple keys in the keystore, 
accessed via different aliases. 
An alias is typically named after a particular role in which the
keystore owner uses the associated key. An alias may
also identify the purpose of the key. For example, the alias
signPersonalEmail might be used to identify a keystore entry whose
private key is used for signing
personal e-mail, and the alias signJarFiles might be used to identify an
entry whose private key is used for
signing JAR files.
The keytool tool can be used 
to 
API methods can also be used to access and to modify a keystore.
jar tool.
A JAR file is a good way of encapsulating multiple files in one spot.
When a file is "signed", the resulting digital signature bytes need to be stored
somewhere. When a JAR file is signed, the signature can go in the JAR file
itself. This is what happens when you use the jarsigner
tool to sign a JAR file.
jarsigner tool to verify the authenticity of
a JAR file signature, 
the person/organization that received the JAR file first needs to 
import into their keystore a certificate authenticating the
public key corresponding to the private key used to sign the code.
The 
Exchanging Files
lesson you how to use Java security tools to sign a document and then export the public key certificate for the public key using keytool.  
corresponding to the private key used to sign that document using keytool.
Then it shows how your recipient can verify your signature by installing your public key certificate and then using the jarsigner tool to verify your
signature.
These two lessons have much in common. In both cases, the first two steps for the code or document sender are to:
jar tool.
keytool -genkey command.
keytool -certreq command;
then send the resulting certificate signing request
to a certification authority (CA) such as VeriSign.
keytool -import command
to import the CA's response.
jarsigner tool and the private key generated earlier.
keytool -export command. 
Then supply the signed JAR file and the 
certificate to the receiver.
keytool -import command.
The keytool will attempt to construct a trust chain from the
certificate to be imported to an already trusted certificate in the
keystore. If that fails, the keytool will display the certificate fingerprint
and prompt you to verify it.
If what was sent was code, the receiver also needs to modify a policy file to permit the required resource accesses to code signed by the private key corresponding to the public key in the imported certificate. The Policy Tool can be used to do this.
If what was sent was one or more documents, the receiver needs to
verify the authenticity of the JAR file signature, 
using the jarsigner tool.
This lesson discusses the two optional steps. The other steps are covered in the next two lessons, Signing Code and Granting It Permissions and Exchanging Files .
When keytool is used to generate public/private key pairs,
it creates a keystore entry containing a private key and a self-signed
certificate for the public key.
(That is, the certificate is signed using the corresponding private key.)
This may be adequate if the people receiving your
signed files already know and trust your identity.
However, a certificate is more likely to be trusted by others if it is signed by a certification authority (CA). To get a certificate signed by a CA, you first generate a certificate signing request (CSR), via a command such as the following:
keytool -certreq -alias alias -file csrFile
You then submit this file to a CA, such as VeriSign, Inc. The CA authenticates you, the requestor ("subject"), and then signs and returns a certificate authenticating your public key. By signing the certificate, the CA vouches that you are the owner of the public key.
In some cases, the CA will return a chain of certificates, each one authenticating the public key of the signer of the previous certificate in the chain.
If you submitted a certificate signing request (CSR) to a certification authority (CA), you need to replace the original self-signed certificate in your keystore with a certificate chain by importing the certificate (or chain of certificates) returned to you by the CA.
But first you need a "trusted certificate" entry in your keystore 
(or in the cacerts keystore file, described below)
that authenticates the CA's public key. With such an entry the CA's
signature can be verified. That is, the CA's signature
on the certificate, or on the final certificate in the
chain the CA sends to you in response to your
CSR, can be verified. 
Before you import the certificate reply from a CA, you need 
one or more  "trusted certificates" in your keystore or in the
cacerts file.
The cacerts file represents a system-wide keystore with CA certificates.
This file resides in the JRE security properties directory,
java.home/lib/security, where java.home is
the JRE installation directory. 
cacerts File
cacerts 
file as entities for signing and issuing certificates to 
other entities, you must manage the cacerts file carefully. 
The cacerts file should contain only certificates of the 
CAs you trust. It is your responsibility to 
verify the trusted root CA certificates bundled 
in the cacerts file and make your own trust 
decisions. To remove an untrusted CA certificate 
from the cacerts file, use the delete option of 
the keytool command. 
You can find the cacerts file in the JRE 
installation directory. Contact your system administrator 
if you do not have permission to edit this file.
cacerts file contains a number of trusted CA
certificates. If you sent your CSR to one of these trusted
vendors (such as VeriSign),
you won't need to import the vendor's root  
certificate as a trusted certificate in your keystore; you can
go on to the next section to 
see how to import the 
certificate reply from the CA.
A certificate from a CA is usually either 
self-signed or signed by another CA, in which case you also need a
certificate authenticating that CA's public key. Suppose that company
ABC, Inc., is a CA and that you obtain a
file named ABCCA.cer, purportedly a 
self-signed certificate from
ABC, authenticating that CA's public key. 
Be very careful to ensure that the certificate is
valid prior to importing it as a "trusted" certificate!
View it first (using the keytool -printcert command or the
keytool -import command 
without the -noprompt option),
and make sure that the displayed certificate fingerprint(s) match the 
expected ones. You can call the person who sent the certificate
and compare the fingerprint(s) that you see with the ones that they show
or that a secure public key repository shows.
Only if the fingerprints are equal is it guaranteed that the certificate has not been 
replaced in transit with somebody else's (for example, an attacker's) certificate.
If such an attack took place and you did not check the certificate
before you imported it, you would end up trusting anything the
attacker has signed.
If you trust that the certificate is valid, you can add it to your keystore via a command such as the following:
keytool -import -alias alias
        -file ABCCA.cer -keystore storefile 
ABCCA.cer, 
and it is assigned the specified alias.
Once you've imported the required trusted certificate(s), as described
in the previous section, or they are
already in your keystore or in the cacerts file,
you can import the certificate reply and thereby
replace your self-signed certificate with a certificate
chain. This chain will be either the one returned by the CA in response to
your request (if the CA reply is a chain) or one constructed (if the 
CA reply is a single certificate) by using 
the certificate reply and trusted certificates that are already available 
in the keystore or in the 
cacerts keystore file.
As an example, suppose that you sent your certificate signing request to VeriSign. You can then import the reply via the following, which assumes that the returned certificate is in the file specified by certReplyFile:
keytool -import -trustcacerts -keystore storefile -alias alias -file certReplyFile
Type this command on one line.
The certificate reply is validated by
using trusted certificates from the keystore and optionally by using the
certificates configured in the cacerts keystore file (if the
-trustcacerts option is specified).
Each certificate in the chain is verified, using the
certificate at the next level higher in the chain. You need to
trust only the top-level "root" CA certificate in the chain. If you do not
already trust the top-level certificate, keytool will display the fingerprint
of that certificate and ask you whether you want to trust it.
The new certificate chain of the specified (by alias) entry replaces the old certificate (or chain) associated with this entry. The old chain can be replaced only if a valid keypass, the password used to protect the private key of the entry, is supplied. If no password is provided and if the private key password is different from the keystore password, the user is prompted for it.
For more detailed information about generating CSRs and
importing certificate replies, see the keytool
documentation: